Tuncbag, N*, Gosline SJC*, Kedaigle A, Soltis A, Gitter A, Fraenkel E. Network-based interpretation of diverse high-throughput datasets through the Omics Integrator Software Package. PLOS Computational Biology.2016 Apr 20; 12(4):e1004879 PubMed PMID: 27096930
Gosline SJC*, Gurtan AM*, JnBaptiste CK, Bosson A, Milani P, Dalin S, Matthews B, Yap YS, Sharp PA, Fraenkel E. Transcriptional networks amplify the effects of microRNAs. Cell Rep. 2016 Jan 12;14(2):310-9. Epub 2015 Dec 31. PubMed PMID: 26748710.
Gosline SJC, Oh C, Fraenkel E. SAMNetWeb: Identifying condition-specific networks linking signaling and transcription. Bioinformatics Epub 2014 Nov 19. PubMed PMID: 25414365
Pluquet O, Dejeans N, Bouchecareilh M, Lhomond S, Pineau R, Higa A, Delugin M, Combe C, Loriot S, Cubel G, Dugot-Senant N, Vital A, Loiseau H, Gosline SJ, Taouji S, Hallett M, Sarkaria JN, Anderson K, Wu W, Rodriguez FJ, Rosenbaum J, Saltel F, Fernandez-Zapico ME, Chevet E. Posttranscriptional regulation of PER1 underlies the oncogenic function of IREalpha. Cancer Research. 2013 Aug 1;73(15):4732-43. doi: 10.1158/0008-5472.CAN-12-3989. Epub 2013 Jun 10. PubMed PMID: 23752693
Huang SS, Clarke DC, Gosline SJC, Labadorf A, Chouinard CR, Gordon W, Lauffenburger DA, Fraenkel, E. Linking proteomic and transcriptional data through the interactome and epigenome reveals a map of oncogene-induced signaling. PLoS Computational Biology.2013;9(2):e1002887. doi: 10.1371/journal.pcbi.1002887. Epub 2013 Feb 7. PubMed PMID: 23408876
Gosline SJC, Spencer SJ, Ursu O, Fraenkel E. SAMNet: a network-based approach to integrate multi-dimensional high throughput datasets. Integr Biol (Camb). 2012 Oct 22;4(11):1415-27. PubMed PMID: 23060147
Pla-Roca M, Leulmi RF, Tourekhanova S, Bergeron S, Laforte V, Moreau E, Gosline SJC, Bertos N, Hallett M, Park M, Juncker D. Antibody colocalization microarray: A scalable technology for multiplex protein analysis in complex samples. Mol Cell Proteomics. 2011 Dec 14. PubMed PMID: 22171321.
Gosline SJC*, Nascimento M*, McCall LI, Zilberstein D, Thomas DY, Matlashewski G, Hallett M. Intracellular eukaryotic parasites have a distinct unfolded protein response. PLoS One. 2011 Apr 29;6(4):e19118. PubMed PMID: 21559456.
Gilchrist A, Au CE, Hiding J, Bell AW, Fernandez-Rodriguez J, Lesimple S, Nagaya H, Roy L, Gosline SJC, Hallett M, Paiement J, Kearney RE, Nilsson T, Bergeron JJ. Quantitative proteomics analysis of the secretory pathway. Cell. 2006 Dec 15;127(6):1265-81. PubMed PMID: 17174899.
Scott MS, Calafell SJ, Thomas DY, Hallett MT. Refining protein subcellular localization. PLoS Comput Biol. 2005 Nov;1(6):e66. Epub 2005 Nov 25. PubMed PMID: 16322766.
Invited Talks
“Transcription factors amplify microRNA effects: A new explanation for the microRNA paradox.” CBBO Group, Broad Institute. Cambridge, MA 2014
“Beyond Argonaute: Understanding microRNA dysregulation in cancer and its effect on protein interaction and transcriptional regulatory networks.” Intelligent Systems for Molecular Biology (ISMB) Boston, MA 2014
“Beyond Argonaute: Understanding microRNA dysregulation in cancer and its effect on protein interaction and transcriptional regulatory networks.” Integrative RNA Biology Special Interest Group (SIG) Boston, MA 2014
“Characterization of microRNA effects through network modeling of intermediate transcription factors.” Tufts CCSB Seminar, April 2014
