Peer Reviewed Journals
[Still have yet to update these, please see my Google Scholar page for the missing publications.]
- Tuncbag, N*, Gosline SJC*, Kedaigle A, Soltis A, Gitter A, Fraenkel E. Network-based interpretation of diverse high-throughput datasets through the Omics Integrator Software Package. PLOS Computational Biology.2016 Apr 20; 12(4):e1004879 PubMed PMID: 27096930
- Gosline SJC*, Gurtan AM*, JnBaptiste CK, Bosson A, Milani P, Dalin S, Matthews B, Yap YS, Sharp PA, Fraenkel E. Transcriptional networks amplify the effects of microRNAs. Cell Rep. 2016 Jan 12;14(2):310-9. Epub 2015 Dec 31. PubMed PMID: 26748710.
- Gosline SJC, Oh C, Fraenkel E. SAMNetWeb: Identifying condition-specific networks linking signaling and transcription. Bioinformatics Epub 2014 Nov 19. PubMed PMID: 25414365
- Pluquet O, Dejeans N, Bouchecareilh M, Lhomond S, Pineau R, Higa A, Delugin M, Combe C, Loriot S, Cubel G, Dugot-Senant N, Vital A, Loiseau H, Gosline SJ, Taouji S, Hallett M, Sarkaria JN, Anderson K, Wu W, Rodriguez FJ, Rosenbaum J, Saltel F, Fernandez-Zapico ME, Chevet E. Posttranscriptional regulation of PER1 underlies the oncogenic function of IREalpha. Cancer Research. 2013 Aug 1;73(15):4732-43. doi: 10.1158/0008-5472.CAN-12-3989. Epub 2013 Jun 10. PubMed PMID: 23752693
- Huang SS, Clarke DC, Gosline SJC, Labadorf A, Chouinard CR, Gordon W, Lauffenburger DA, Fraenkel, E. Linking proteomic and transcriptional data through the interactome and epigenome reveals a map of oncogene-induced signaling. PLoS Computational Biology.2013;9(2):e1002887. doi: 10.1371/journal.pcbi.1002887. Epub 2013 Feb 7. PubMed PMID: 23408876
- Gosline SJC, Spencer SJ, Ursu O, Fraenkel E. SAMNet: a network-based approach to integrate multi-dimensional high throughput datasets. Integr Biol (Camb). 2012 Oct 22;4(11):1415-27. PubMed PMID: 23060147
- Pla-Roca M, Leulmi RF, Tourekhanova S, Bergeron S, Laforte V, Moreau E, Gosline SJC, Bertos N, Hallett M, Park M, Juncker D. Antibody colocalization microarray: A scalable technology for multiplex protein analysis in complex samples. Mol Cell Proteomics. 2011 Dec 14. PubMed PMID: 22171321.
- Gosline SJC*, Nascimento M*, McCall LI, Zilberstein D, Thomas DY, Matlashewski G, Hallett M. Intracellular eukaryotic parasites have a distinct unfolded protein response. PLoS One. 2011 Apr 29;6(4):e19118. PubMed PMID: 21559456.
- Gilchrist A, Au CE, Hiding J, Bell AW, Fernandez-Rodriguez J, Lesimple S, Nagaya H, Roy L, Gosline SJC, Hallett M, Paiement J, Kearney RE, Nilsson T, Bergeron JJ. Quantitative proteomics analysis of the secretory pathway. Cell. 2006 Dec 15;127(6):1265-81. PubMed PMID: 17174899.
- Scott MS, Calafell SJ, Thomas DY, Hallett MT. Refining protein subcellular localization. PLoS Comput Biol. 2005 Nov;1(6):e66. Epub 2005 Nov 25. PubMed PMID: 16322766.
Invited Talks
- “Transcription factors amplify microRNA effects: A new explanation for the microRNA paradox.” CBBO Group, Broad Institute. Cambridge, MA 2014
- “Beyond Argonaute: Understanding microRNA dysregulation in cancer and its effect on protein interaction and transcriptional regulatory networks.” Intelligent Systems for Molecular Biology (ISMB) Boston, MA 2014
- “Beyond Argonaute: Understanding microRNA dysregulation in cancer and its effect on protein interaction and transcriptional regulatory networks.” Integrative RNA Biology Special Interest Group (SIG) Boston, MA 2014
- “Characterization of microRNA effects through network modeling of intermediate transcription factors.” Tufts CCSB Seminar, April 2014
- “Transcriptional activity downstream of microRNA loss: a surprising explanation for how microRNAs work.” Integrative Cancer Biology Program (ICBP) @ MIT retreat, July 2013
- “Intracellular parasites have a distint unfolded protein response”Chemical genomics and its applications to disease, Holetown, Barbados 2010
- “Modeling endoplasmic reticulum quality control.” The Barbadome. Holetown, Barbados 2008.
- “Probabilistic models of endoplasmic reticulum quality control.”ER Trafficking Diseases Holetown, Barbados, 2006.
